2009-7-21 Yu-Sung Su * DESCRIPTION (Version, Date): 0.08-04 * R/mi.info: fix a slot changing logic in update.mi.info 2009-6-23 Yu-Sung Su * DESCRIPTION (Version, Date): 0.08-03 * R/mi: fix a bug in mi.mi, (sampling from wrong data) 2009-6-19 Yu-Sung Su * R/mi.continuous, m.binary, mi.count: n.iter=5 if !is.null(start) 2009-6-18 Yu-Sung Su * DESCRIPTION (Version, Date): 0.08-02 * AllInternal: coerce numerical unordered-categorical variable into factor variable (as.factor(as.characer(x))) 2009-6-17 Yu-Sung Su * R/mi.continuous, mi.binary, mi.count: better way to get xb. 2009-6-16 Yu-Sung Su * DESCRIPTION (Version, Date): 0.08-01 * R/mi.continuous, mi.binary, mi.count: draw.from.beta=TRUE, fix a bug in getting design matrix X. * R/mi.count: fix a bug in computing lambda. * R/mi: take out redundant code in mi method. * R/update.mi.info: formula no longer needs factor() 2009-6-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.07-4 * R/mi.pooled: fix a bug in mi.pooled (B term) 2009-6-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.07-3 2009-6-8 Yu-Sung Su * R/display: display the pooled estimates in the last order. * R/mi.continuous: fix a bug in draws.from.beta ($beta -> $coef) * R/mi.count: fix a bug in draws.from.beta ($beta -> $coef) * R/mi.binary: fix a bug in draws.from.beta ($beta -> $coef) 2009-5-4 Yu-Sung Su * DESCRIPTION (Version, Date): 0.07-2 * new function: write.mi 2009-4-28 Yu-Sung Su * DESCRIPTION (Version, Date): 0.07-1 * rename mi.dichotomous to mi.binary * rename correlated slot to collinear * rename continue.on.convergence to run.past.convergence 2009-4-22 Yu-Sung Su * DESCRIPTION (Version, Date): 0.06-5 * redesign formulas * R/mi.info: fix a bug in mi.correlated.list 2009-4-18 Yu-Sung Su * DESCRIPTION (Version, Date): 0.06-2 * R/mi: fix a bug in the print out of the process * R/mi.info: update.mi.info: revise formula when type is updates as ordered or unorderd categorical type. 2009-4-16 Yu-Sung Su * DESCRIPTION (Version, Date): 0.06-1 * R/mi.preprocess: fix bugs in mi.postprocess() * R/mi: fix bugs in mi.data.frame (was not using rho for mi.copy) * R/mi.correlated.list: if missing pattern are different in both correlated variables, treat this as structured correlation 2009-4-12 Yu-Sung Su * DESCRIPTION (Version, Date): 0.05-1 * R/mi.preprocess: new mi.preprocess and mi.postprocess * add "log-contiunous" variable type 2009-4-7 Yu-Sung Su * man/mi.pooled: new doc for mi.pooled * R/AllClass: mi.lm, mi.glm, mi.mer are obsoleted * R/mi.pooled: new function to pool estimates 2009-4-5 Yu-Sung Su * R/mi: fix dimensional probelm when model is of mulitnom; now coef.convergence is working! * R/mi.preprocess: fix labels lost for unordered-categorical type 2009-4-3 Yu-Sung Su * R/mi: monitor the convergence of unordered-categorical type with binary transformation * R/AllInternal: add .cat2binary .catvarnames, .fool, .foo2 2009-4-2 Yu-Sung Su * R/mi: allow add.priors to be logical, set FALSE to speicify no prior 2009-4-2 Yu-Sung Su * R/mi: allow add.priors to be logical, set FALSE to speicify no prior 2009-3-31 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-6 * R/coef: add mi.mer method * R/se.coef: add mi.mer method * R/display: add mi.mer method * R/bayesglm.mi: add bayesglm.mi * R/lmer.mi: add lmer.mi, glmer.mi * R/mi: add rho into mi.copy procedure to deal with y = 2x 2009-3-20 Yu-Sung Su * R/mi.categorical: fix idx name of the random imputed values * R/mi.polr: fix idx name of the random imputed values 2009-3-20 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-5 * R/mi: fix all(con.check) error 2009-3-11 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-4 * pass Rhat option to mi() 2009-3-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-3 * fix random jump, get coef and start from model fit 2009-3-5 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-2 * add mi.count * add tpye "proportion" 2009-2-23 Yu-Sung Su * R/coef: add coef for mi.lm and mi.glm * R/se.coef: add se.coef for mi.lm and mi.glm 2009-2-4 Yu-Sung Su * man/prepocess: new doc * R/mi.continuous: when start is null, no longer set n.iter=1 * R/mi.binary: when start is null, no longer set n.iter=1 * R/mi.preprocess: new mi.preprocess and mi.postprocess * R/typecast: new typecast, new type (postitive continuous) * R/imputed: add mi.categorical for imputed 2009-1-31 Yu-Sung Su * R/glm.mi: auto.postprocess * R/lm.mi: auto.postprocess 2009-1-31 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-0.1 2009-1-26 Yu-Sung Su * clean up redundant code * no more squareroot-continuous, logscale-continuous, mi.nonnegative, mi.start, mi.matrix * R/AllInternal: add internal function from mi.info * R/mi.info: 1. remove some internal functions to AllInternal 2. correct imp.formula and move to AllInternal 2009-1-21 Yu-Sung Su * man/mi: description about add.priors. * R/mi: merge augment.data and K into add.priors. 2009-1-17 Yu-Sung Su * man/mi.compeleted: add an example of mi.data.list * R/AllInternal: add .preprocess.data, .postprocess.data, .create.missing * R/AllGeneric: add mi.data.list * R/mi.completed: add mi.data.list.mi 2009-1-8 Yu-Sung Su * R/mi.info.update: make mi.info.update into S3 method. 2009-1-7 Yu-Sung Su * DESCRIPTION (Version, Date): depend abind package * array.append and array.append3 are obsolete. Use abind instead. 2009-1-5 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-03 2008-12-30 Yu-Sung Su * add K parameter to mi procedures. If K>0, will cool the mi with probabilty q such that q = K/iteration. This will create noise to the mi process by drawing from marginals. 2008-12-28 Yu-Sung Su * add augment.data option to mi procedures. If TRUE, will augment the data with 10% of the observaed data. * return data.tmp into the global if mi abrupted with errors. 2008-10-7 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-02 * create display methods for glm.mi & lm.mi * move some internal functions to AllInternal * create glm.mi & lm.mi classes 2008-10-6 Yu-Sung Su * reverse S4 coef methods back to S3 to pass R check * reverse S4 fitted methods back to S3 to pass R check * reverse S4 residuals methods back to S3 to pass R check * reverse S4 plot methods back to S3 to pass R check * currently, no resid S3 methods 2008-9-9 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-01 * First release!